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Vision Research

Elsevier BV

Preprints posted in the last 90 days, ranked by how well they match Vision Research's content profile, based on 26 papers previously published here. The average preprint has a 0.01% match score for this journal, so anything above that is already an above-average fit.

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Macaque retina simulator

Vanni, S.; Vedele, F.; Hokkanen, H.

2026-03-11 neuroscience 10.64898/2026.03.09.710551 medRxiv
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The primate retina dissects visual scenes into multiple retinocortical streams. The most numerous retinal ganglion cell (GC) types, midget and parasol cells, are further divided into ON and OFF subtypes. These four GC populations have anatomical and physiological asymmetries, which are reflected in the spike trains received by downstream circuits. Computational models of the visual cortex, however, rarely take GC signal processing into account. We have built a macaque retina simulator with the aim of providing biologically plausible spike trains for downstream visual cortex simulations. The simulator is based on realistic sampling density and receptive field size as a function of eccentricity, as well as on two distinct spatial and three temporal receptive field models. Starting from data from literature and earlier receptive field measurements, we synthetize distributions for receptive field parameters, from which the synthetic units are sampled. The models are restricted for monocular and monochromatic stimuli and follow data from the temporal hemiretina which is more isotropic. We show that the model patches conform to anatomical data not used in the reconstruction process and characterize the responses with respect to spatial and temporal contrast sensitivity functions. This simulator allows starting from a stimulus video and provides biologically plausible spike trains for the distinct unit types. This supports development of thalamocortical primate model systems of vision. In addition, it can provide a reference for more biophysical retina models. The independent parameters are housed in text files supporting reparameterization for particular macaque data or other primate species. Author summaryVisual environment provides a rich source of information, and the visual system structure and function has been studied for decades in many species, including humans. The most complex data in mammalian species are processed in the cerebral cortex, but to date we are still missing a functioning model of cortical computations. While the earlier anatomical and physiological data describe many details of the visual system, to understand the functional logic we need to numerically simulate the complex interactions within this system. To pave the way for simulating visual cortex computations, we have developed a functioning model for macaque retina. The neuroinformatics comprises a review and re-digitized existing retina data from literature, as well as statistics of earlier macaque receptive field data. Finally, we provide software which brings the collected neuroinformatics to life and allows researchers to convert visual input into biologically feasible spike trains for simulation experiments of visual cortex.

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Transfer of symbolic numeral adaptation across eyes and hemifields

Nakamura, A.; Luo, J.; Yokoi, I.; Takemura, H.

2026-03-12 neuroscience 10.64898/2026.03.10.710478 medRxiv
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Visual perception of symbolic numerals is essential for everyday tasks; however, the neural and perceptual mechanisms underlying this ability remain unclear. Partially occluded digital numerals can elicit bistable perception, and adaptation to symbolic numerals alters the perception of these ambiguous stimuli. We aimed to examine how symbolic numeral adaptation is related to hierarchical visual processing by testing its interocular and interhemifield transfer. Experiment 1 tested interocular transfer by presenting the test stimulus to either the same or opposite eye as the adaptation stimulus. Experiment 2 assessed interhemifield transfer by presenting the test stimulus to either the same or opposite hemifield as the adaptation stimulus. Experiment 3 examined the interhemifield transfer of adaptation confined to the upper parts of digital numerals. Our results showed that adaptation to digital numerals induced shifted perceptual interpretations that transferred across eyes. In addition, we found that adaptation to digital numerals induced a relatively small but statistically significant interhemifield transfer. In contrast, adaptation restricted to the upper parts of digital numerals showed no significant interhemifield transfer. These findings suggest that the perceptual interpretation of symbolic numerals involves visual processing stages that integrate information across the eyes and hemifields.

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At the Roots of Plant Awareness Disparity (PAD): Semantic processing and Numerosity Perception

Guerra, S.; Roccato, M.; Oletto, C. M.; Ghiani, A.; Bertamini, M.; Battaglini, L.

2026-02-17 neuroscience 10.64898/2026.02.13.705851 medRxiv
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Plant Awareness Disparity (PAD) refers to the inability of humans to notice plants and recognize their importance. Among the various factors (e.g., cultural) contributing to PAD, the less prominent visual cues of plants (e.g., color) might be one of the main features making them less noticeable to human perception. Here, we investigated whether PAD affects basic numerosity perception, which represents a fundamental cognitive ability that allows individuals to interpret and interact with their surroundings. Across three experiments, we compared how participants perceive the numerosity of plants (specifically trees), animals, and minerals. Participants completed two tasks: an estimation task, in which they reported the exact number of items in a single set and a comparison task, which required them to discriminate numerosity between two sets of items. In Experiment 1, both tasks employed colored images. We hypothesized that participants would underestimate the number of plant items in comparison to animals and minerals, given that plant stimuli typically attract less attention. In Experiment 2, black and white images were used to test whether the green color of plants contributes to PAD. In Experiment 3, all items were rotated of 180{degrees} to disrupt semantic recognition and assess whether PAD arises from higher-level cognitive processes. Results revealed a consistent underestimation of plants in Experiment 1 and 2, but this effect diminished in Experiment 3. The reduction of this effect suggests that semantic recognition processes may contribute to PAD. These results highlight how cognitive biases toward plants can influence basic perceptual judgments essential for everyday functioning.

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Spatial correspondences of Audiovisual Stimuli on Double Flash Illusion Perception and its Cognitive Modeling

Zheng, Y.; Chen, L.

2026-02-19 neuroscience 10.64898/2026.02.19.706740 medRxiv
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Perceptual processing integrates information from multiple sensory modalities to form a coherent representation of the environment. A classic example of such is the Sound-Induced Flash Illusion (SIFI), where the perceived number of visual flashes is altered by conflicting auditory stimuli. While the SIFI is a well-established phenomenon of multisensory integration, the influence of physical spatial characteristics--specifically stimulus eccentricity and spatial congruence--on integration levels remains debated.To address this gap, this study used the SIFI paradigm to investigate the effect of visual stimulus spatial location and the spatial congruence between auditory and visual stimuli on audiovisual integration. In Experiments 1 and 2, we found that when spatial attention was controlled via cueing, unimodal visual performance remained consistent across locations. However, the susceptibility to SIFI increased progressively from the central to the peripheral visual field, exhibiting a spatial pattern of Gaussian distribution. Bayesian modeling further supported this by showing that this spatial modulation was driven by an increase in the integration weight assigned audiovisual representations in the periphery, rather than changes in sensory uncertainty alone. Conversely, Experiment 3 demonstrated that the spatial congruence of audiovisual stimuli did not affect the SIFI or alter the integration processing. These findings refine our current understanding of the spatial modulation upon audiovisual integration. By incorporating the visual systems spatial properties into a Bayesian framework, we provide a computational explanation for the eccentricity-dependent nature of multisensory integration.

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Voluntary temporal attention improves perception even in the absence of temporal competition

Tian, K. J.; Motzer, J. A.; Denison, R. N.

2026-02-14 neuroscience 10.64898/2026.02.11.705419 medRxiv
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When successive stimuli occur close enough together in time, their perception can be impaired. Such impairments indicate temporal competition between successive stimuli for representational resources. Voluntary temporal attention can bias processing resources in favor of a behaviorally relevant moment, improving perception at the attended time at the expense of impairments at unattended times. However it is unclear whether these perceptual tradeoffs across time arise because voluntary temporal attention selects among actively competing stimulus representations, such as within visual working memory, or if instead, temporal attention facilitates stimulus processing prior to a competitive stage. Here we used a temporal cueing task with up to two targets in succession to test whether and how the effects of temporal attention depend on temporal competition. We found that voluntary temporal attention improved performance even in the absence of temporal competition, when only one stimulus appeared during the trial. Moreover, the magnitude of attentional enhancement was comparable with and without competition. These results suggest that voluntary temporal attention enhances perception by facilitating processing prior to a competitive stage, rather than by resolving conflicts between actively competing stimulus representations. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=126 SRC="FIGDIR/small/705419v2_ufig1.gif" ALT="Figure 1"> View larger version (20K): org.highwire.dtl.DTLVardef@1f1f8dforg.highwire.dtl.DTLVardef@10a33f1org.highwire.dtl.DTLVardef@d81cfborg.highwire.dtl.DTLVardef@56a432_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Can category-selective cortex predict categorisation behaviour?

Maniquet, T.; Fang, H.; Ratan Murty, N. A.; Op de Beeck, H.

2026-01-26 neuroscience 10.64898/2026.01.23.701404 medRxiv
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One of the distinctive features of the human visual system is the presence in occipito-temporal cortex (OTC) of regions that show preferential activation to specific categories of visual objects. To understand how this selectivity relates to categorisation behaviour, studies have employed a distance-to-bound approach (DTB), where multivariate brain activity is used to estimate a decision boundary, from which behavioural performance can be predicted. Using this approach, correlations have been found between activity in OTC, and behavioural performance when carrying out certain categorisation tasks. However, it remains unclear what determines where in OTC this correlations can be found, and with which categorisation tasks they can be found. Here, we bridged this gap by relating category-selective regions of OTC, to behavioural performance while participants categorised images as belonging or not to their preferred categories. We adopted a more basic approach and considered simple, univariate activity, rather than relying on decoding to build our DTB. Our results show that activation in regions selective to faces (FFA & OFA), bodies (EBA), and scenes (PPA), is sufficient to predict behavioural performance while categorising images as being faces, bodies, or scenes, respectively. These results are largely consistent across reaction time and motor movements, and generalise to animacy classification. Overall, our data adds to evidence that category-selective regions in OTC can serve to guide categorisation behaviour, and underlines the validity of the DTB approach to address this relationship.

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When the brightest is not the best: illuminant estimation from the geometry of specular highlights

Morimoto, T.; Lee, R. J.; Smithson, H. E.

2026-01-24 neuroscience 10.64898/2026.01.22.700600 medRxiv
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Color constancy allows us to perceive stable object colors under different lighting conditions by reducing the impact of lighting. Information about illuminant color could be derived from a white surface or a specular highlight. The "brightest is white" heuristic has been frequently incorporated in illumination estimation models, to identify illuminant color. Here, we tested an alternative hypothesis: we use structured changes in the proximal image to identify highlight regions, even when they are not the brightest elements in the scene. In computer-rendered scenes, we varied the reliability of "brightest element" and "highlight geometry" cues, testing their effect on a color constancy task. Each scene had a single spherical surface lit by several point lights with identical spectral properties. The surface had a uniform spectral reflectance but a noise texture that attenuated the reflectance by a variable scale factor. We tested three levels of specularity: zero (matte), low, and mid. Observers watched a 1.5-second animation and responded if color changes were due to illuminant or material changes. Discrimination performance for matte surfaces was nearly at chance level, as predicted. However, as specularity increased, performance improved significantly. Observers outperformed an ideal observer model who relied solely on the brightest element. Notably, when the specular region appeared on a dark part of the texture, observer performance improved even more--even though the brightest element heuristic would predict a decrease. When specular geometries were difficult to identify due to phase scrambling, observer performance significantly dropped. These results suggest that we do not simply rely on the brightest element, but rather utilize regularities of diffuse and specular components of the proximal image to solve surface and illuminant ambiguities.

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Interplay of action-based prediction and top-down attention: EEG evidence for joint modulation of late perceptual processing

Holstein, T.; Sarrazin, J.-C.; Berberian, B.; Desantis, A.

2026-01-31 neuroscience 10.64898/2026.01.28.702103 medRxiv
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Voluntary action shapes our perception through sensory predictions of its consequences. These predictions are thought to inhibit perceptual processing of predicted outcomes, leading to sensory attenuation. However, some studies have reported findings that contrast with this effect, suggesting that the influence of predictions may reflect, or interact with, attentional processes. Here, we investigated the interplay of action-based prediction and top-down attention on early and late perceptual processing, where prediction and attention refer to the likelihood of a sensory event and its behavioral relevance, respectively. Electroencephalography (EEG) was recorded while participants viewed two sequential gratings. The orientation of the first was either predicted and self-generated or unpredicted and externally generated. Participants judged the tilt direction of the second grating relative to the first but responded only when the grating appeared in a task-relevant color. EEG analyses revealed no modulation of early visual potentials (N1a), but modulations in later processing stages (P3b). Specifically, the P3b exhibited reduced amplitude for predicted and self-generated stimuli compared to unpredicted and externally generated ones, but only when they were task-relevant. Multivariate pattern analysis further showed that the significant temporal cluster supporting decoding of the first gratings orientation was largest for relevant, predicted and self-generated stimuli. Our results suggest an optimization process whereby action-based prediction, when aligned with task goals, reduces the amount of evidence needed and increases its accumulation speed, while preserving sensory representations as accurate as in the absence of prediction/self-generation. HighlightsO_LIFeature-based attention and prediction were orthogonally manipulated in an agency context. C_LIO_LINo early sensory modulation by attention or action-based prediction was observed. C_LIO_LIReduction of both P3b amplitude and latency emerged for predicted/self-generated and task-relevant stimuli. C_LIO_LIMultivariate analysis and behavior results support an interpretation whereby relevant action-based predictions optimize evidence accumulation process. C_LI

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Visual crowding in albinism: Evidence for a cortical sensory deficit with oculomotor influences

Tailor-Hamblin, V. K.; Theodorou, M.; Dahlmann-Noor, A.; Dekker, T. M.; Greenwood, J. A.

2026-03-18 neuroscience 10.64898/2026.03.16.712204 medRxiv
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PurposeFoveal vision in individuals with albinism is impaired not only by reduced visual acuity but also by elevated crowding - the disruption of object recognition in clutter. Because albinism is characterised by both retinal underdevelopment and nystagmus (uncontrolled eye movements), it is unclear whether crowding is elevated primarily from image motion due to eye movements or an additional sensory deficit. To disentangle these factors, we examined the spatial and featural selectivity of foveal crowding in albinism, comparing performance with controls and prior data from individuals with idiopathic infantile nystagmus syndrome (IINS), where nystagmus occurs without retinal underdevelopment. MethodsAdults with albinism (n=8) and age-matched controls (n=8; 19-49 years) identified the orientation of foveal Landolt-C targets. In Experiment 1, targets were presented alone or flanked horizontally or vertically to assess spatial selectivity. In Experiment 2, flankers were of the same or opposite contrast polarity to assess featural selectivity. Stimulus size was adaptively scaled using QUEST to estimate gap-size thresholds. ResultsCrowding was substantially elevated in albinism, relative to both controls and IINS. Experiment 1 revealed stronger crowding for horizontally than vertically positioned flankers in albinism, mirroring the predominant direction of nystagmic eye movements. In Experiment 2, opposite-polarity flankers did not reduce crowding, indicating an absence of selectivity for target-flanker similarity. ConclusionsFoveal crowding in albinism is markedly elevated, with a nystagmus-related spatial anisotropy and a lack of featural selectivity. These characteristics suggest that these elevations reflect both retinal image motion and a substantial sensory deficit arising from abnormal visual development.

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Sound lateralization Ability is affected by saccade direction but not Eye Movement-Related Eardrum Oscillations (EMREOs)

Sotero Silva, N.; Bröhl, F.; Kayser, C.

2026-02-05 neuroscience 10.1101/2025.11.05.686724 medRxiv
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Eye-movement-related eardrum oscillations (EMREOs) are pressure changes recorded in the ear that supposedly reflect displacements of the tympanic membrane induced by saccadic eye movements. Previous studies hypothesized that the underlying mechanisms might play a role in combining visual and acoustic spatial information. Yet, whether and how the eardrum moves during an EMREO and whether this movement affects acoustic spatial perception remains unclear. We here probed human acoustic lateralization performance for sounds presented at different times during a saccade (hence the EMREO) in two tasks, one relying on free-field sounds and one presenting sounds in-ear. Since the EMREO generation likely involves the middle ear muscles, whose tension can alter sound transmission, it is possible that judgements of sound locations may vary with the state of the ERMEO at the time of sound presentation. However, when testing two specific hypotheses of how movements of the eardrum underlying the EMREO may affect spatial hearing, we found no evidence in support of this. Still, and in line with previous studies, we found that participants lateralization responses were shaped by the spatial congruency of the saccade target direction and the sound direction. Thus, either the eardrum does not move directly as reflected by the EMREO signal, or despite its movement the underlying changes at the tympanic membrane only have minimal perceptual impact. Our results call for more refined studies to understand how the eardrum moves during a saccade and whether or how the EMREO impacts spatial perception.

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Image modifications reduce differences in natural-image encoding by retinal ganglion cells between natural and optogenetic stimulation

Ramakrishna, V.; Gollisch, T.

2026-03-09 neuroscience 10.64898/2026.03.06.710066 medRxiv
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Photoreceptor degeneration is among the leading causes of blindness and optogenetics as a potential therapeutic measure has garnered much attention over recent years. In this approach, light-sensitive molecules like Channelrhodopsin-2 (ChR2) are inserted into neurons in the retina to play the role of light-sensing elements after the loss of photoreceptors. Previous studies have shown that retinal ganglion cells (RGCs) in blind animal models with optogenetically modified retinas can respond reliably to steps in light intensity or similar diagnostic stimuli. Yet, little is known about how responses to natural stimuli in optogenetically treated retinas compare to normal, photoreceptor-mediated responses and how any differences might be counteracted by adjusting the stimulation. In this work, using mice of both sexes with intact photoreceptors as well as ChR2 expression in RGCs, we directly compared the encoding of natural images by individual RGCs under photoreceptor and optogenetic stimulation. We observed that evoked firing rates under optogenetic stimulation, relative to photoreceptor stimulation, often display reduced thresholding effects and a more linear dependence on receptive-field activation as well as reduced sensitivity to local spatial contrast and reduced dynamic range. Based on these differences, we devised modifications of the natural images, including thresholding and scaling of pixel intensities together with spatial low-pass filtering, and found that using such modified images under optogenetic stimulation can lead to stronger responses that are also more similar to the original photoreceptor-evoked responses. These findings may help optimize stimulation of optogenetically modified retinas to achieve more natural vision in future therapeutic applications. Significance StatementDegenerative diseases that lead to the loss of photoreceptors, the eyes light sensors in the retina, are a major cause of blindness. One promising therapy approach uses optogenetics to place light-sensitive proteins into retinal neurons, allowing them to detect light in the photoreceptors stead. We compared how the retina responds to natural images when stimulated via the inserted light-sensitive proteins versus normal activation and observed systematic differences in how images are represented, owing to reductions in response range, signal thresholding, and contrast sensitivity. Yet, by modifying the presented images, including spatial blurring as well as intensity thresholding and scaling, we managed to restore more natural image responses. These results suggest ways to improve visual quality from optogenetic treatments of blindness.

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EEG-Based Decoding of Color and Visual Category Representations Is Reliable Within and Across Sessions

Frenkel, C.; Deouell, L. Y.

2026-01-21 neuroscience 10.64898/2026.01.18.699677 medRxiv
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The human visual system represents stimuli in a rich and detailed manner. Traditional methods of studying visual representations in humans, such as event-related potentials (ERP), revealed numerous distinctions between the brain activity elicited by different categories of stimuli. However, these methods miss the information embedded in the spatial distributions of brain activity, or patterns, and are not always sensitive to study visual representations of different stimuli at the single participant or single trial level. Time-resolved multivariate pattern classification analysis (MVPA), or Decoding, efficiently extracts the visual representations of stimuli from the EEG topography without a-priori assumptions about the location of the effect in time and space at the single participant level. The rich information this method provides has increased its popularity dramatically in recent years. Yet, different participants show variable quality of decoding performance, and it is unclear if the accuracy of decoding is maintained within participants across multiple sessions, tasks, attentional conditions and visual features. In the current study, participants performed three visual tasks, over two sessions (1-7 days apart). We examined the correlation of decoding accuracy: within the cross-validation set, between sessions, between features (color and category) and to different measurements of the ERP signal and behavioral performance. We also examined how models generalized to different tasks and different attention conditions. We found that decoding accuracies varied substantially across participants, and that decoding accuracy was reliable within participant, over sessions, attention condition and task. This suggests the decodability behaves like an individual trait. Moreover, the spatial patterns underlying the decoding (classification weights) generalized across different tasks, attentional conditions and sessions. This suggests minimal representational drift at the resolution allowed by the EEG. We conclude that EEG decoding is a reliable method, and that visual representations are stable.

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Loss of calcium-binding protein Cbp53E leads to delayed repolarization of photoreceptor cells in Drosophila

Scott, K.; Zwirner, H.; Alexander, R.; Cleary, N.; Chilson, J.; Gonnelly, S.; Schultz, B.; Jordan, G.; Bot, N.; Hawks, E.; Olson, G.; Quintana, E.; Brekken, C.; Link, A.; Wolsky, J.; Talafuse, M.; da Costa Aparecido, R.; Ronderos, D. S.

2026-02-18 neuroscience 10.64898/2026.02.13.705836 medRxiv
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Calcium functions as an important second messenger in a wide variety of intracellular processes. In photoreceptor cells, calcium is involved in activation, deactivation, and adaptation in response to light stimuli. Calcium-binding protein 53E (Cbp53E, also known as calbindin-32 or cbn), a protein with 6 EF-Hand domains thought to act as a calcium buffer, was previously identified to have elevated expression levels in the eye of drosophila. While a recent study showed that transgenic flies lacking Cbp53E have aberrant axonal arborization at the neuromuscular junction, nothing is known about the role of Cbp53E in the visual system. We performed electroretinogram (ERG) recordings on Cbp53E mutant flies to test whether eye function was affected. Here, we report that Cbp53E null mutants exhibit a prolonged repolarization (or slow termination) phenotype which can be rescued by expressing Cbp53E in photoreceptor cells. The human homologs Calbindin 2, Calbindin 1, and S100G also rescue the Drosophila ERG phenotype. This supports a role for Cbp53E in regulating intracellular calcium levels of photoreceptor cells and contributing to normal sensory neuron response dynamics in vivo in Drosophila and suggests a similar function in human photoreceptor cells as well.

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Predictive visual uncertainty around moving trajectories influences causality judgments in launching displays

Eicke-Kanani, L.; Tatai, F.; Rosenberger, L.; Schmitter, C.; Straube, B.; Wallis, T. S.

2026-02-09 animal behavior and cognition 10.64898/2026.02.06.704483 medRxiv
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Michottes "launching displays" are animations of collision-like interactions between two objects that elicit a stable and robust impression that one object, the launcher, caused another object, the target, to move. Although it is well-known that unexpected disruptions of movement continuation between launcher and target decrease causal impressions in centre-to-centre collisions, the role of observers visual uncertainty around predicted moving trajectories remains relatively unexplored. In this work, we (1) assess observers uncertainty around post-collision moving angles in a trajectory prediction task and (2) collect their causal impression in a causality rating task. In the latter task, observers viewed centre-to-centre collisions with different levels of movement continuity between the launcher and the target disc. By presenting different launch orientations, we exploited the well-known oblique effect to vary trajectory prediction uncertainty within individuals. If observers rely on their trajectory predictions to rate the causality of the collision, we expect their accuracy in (1) to have a systematic influence on their causality rating in (2). We replicate previous findings that observers report stronger causal impressions in trials where the target and the launcher move in the same direction and weaker causal impressions for collisions where the target and the launcher moving trajectory deviated. Furthermore, causality ratings were on average higher for oblique compared to cardinal launch directions, implying that increased sensory uncertainty induces a stronger causal impression. We hope this work will inspire deeper empirical assessments and computational models describing the role of sensory uncertainty and predictive processes in shaping subjective impressions of causality.

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Perceptual consequences of retinal stabilization with high-frequency non-stroboscopic displays

Li, Y. H.; Mizobuchi, S.; Wang, J. Z.; Rucci, M.

2026-02-23 neuroscience 10.1101/2024.05.02.592177 medRxiv
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During natural fixation, ocular drifts continually modulate the input to the retina. Previous studies have shown that this motion enhances sensitivity to fine spatial detail, a conclusion supported by findings of reduced sensitivity to high--but not low--spatial frequencies when stimuli are immobilized on the retina for brief periods of time. Most prior retinal-stabilization studies have relied on fast-phosphor cathode ray tube (CRT) displays or adaptive optics scanning laser ophthalmoscopes (AOSLOs), both of which deliver temporally pulsed stimulation. This raises the question of whether stimulus flicker contributed to the previously observed perceptual impairments under retinal stabilization. Here, we replicate stabilization experiments using two types of fast displays that provide more continuous stimulation: liquid-crystal display (LCD) and organic light-emitting diode (OLED) monitors. We again find an impairment in sensitivity to high spatial frequencies under retinal stabilization. Analyses of the retinal input confirm high-quality stabilization within the temporal bandwidth of human vision. These results show that retinal-stabilization effects are robust across display technologies and are little affected by the specific dynamics of modern displays.

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Linking reaction time variability to physiological markers of arousal across timescales

Issar, D.; Skog, E. E.; Grigg, M.; Kainerstorfer, J. M.; Smith, M. A.

2026-03-23 neuroscience 10.64898/2026.03.19.713034 medRxiv
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Reaction time is a measure of the speed of our response to stimuli in the environment. Even for a well-trained task, a subjects reaction time varies. One source of this variability is internal state fluctuations (such as changes in arousal). There are few studies that systematically quantify the extent to which reaction time varies across different timescales and link this to measures of systemic physiology associated with arousal. In much of the literature, it is assumed but not demonstrated that behavioral and systemic measurements associated with arousal will be consistently linked because both estimate a common underlying arousal process. In this work, we examined this assumption by simultaneously measuring reaction time, heart rate, and pupil diameter in rhesus macaque monkeys performing several visual tasks over hours and across hundreds of sessions. We found a portion of the variability in reaction time could be linked to systemic physiological signatures of arousal on fast timescales from second to second and slower timescales from minute to minute. This link between reaction time and systemic physiology was also present for different biomarkers of arousal (heart rate and pupil). However, the strength of this relationship varied depending on the arousal biomarker. Our findings support the conclusion that there are multiple arousal mechanisms that act simultaneously to influence behavior and multiple timescales at which they operate.

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Negative emotional visual stimuli alter specific improvised dance biomechanics in professional dancers

Maracia, B. C. B.; Souza, T. R.; Oliveira, G. S.; Nunes, J. B. P.; dos Santos, C. E. S.; Peixoto, C. B.; Lopes-Silva, J. B.; Nobrega, L. A. O. d. A.; Araujo, P. A. d.; Souza, R. P.; Souza, B. R.

2026-03-20 neuroscience 10.64898/2026.03.18.711707 medRxiv
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Dance is a core form of human-environment interaction and a powerful medium for emotional expression, yet dancers are routinely exposed to environmental affective cues that may shape their movement. We tested whether a negative emotional context induced immediately before improvisation alters dance biomechanics. Twenty professional dancers performed two 3-min improvised dances. Between dances, they viewed either Neutral or Negatively valenced pictures from the International Affective Picture System (IAPS; 2 min 40 s, 5 s per image). Eye tracking verified attention to the visual stream. Mood was assessed at four time points (PT1-PT4) using the Brazilian Mood Scale (BRAMS), and full-body, three-dimensional kinematics were captured at 300 Hz using a 9-camera optoelectronic system (Qualisys) and processed to measure global movement amplitude and expansion. Negative IAPS exposure increased tension, depression, fatigue, and decreased vigor from PT2 to PT3. Biomechanically, the Negative Stimulus dancers showed a significant reduction in global movement amplitude after negative IAPS exposure, with reduced movement amplitude of the body extremities. In contrast, global movement expansion remained unchanged; that is, the extremities were not positioned closer or farther from the pelvis. Neutral images produced no mood change and no measurable modulation of movement amplitude or expansion. Together, these results support the hypothesis that improvised dance carries biomechanical signatures of the dancers current affective state, beyond the intended expressive content, and provide an automated motion-capture workflow for studying emotion-movement coupling in spontaneous dance. HighlightsNegative visual context shifted dancers mood toward negative affect Negative images reduced movement amplitude in improvised dance Movement expansion remained stable despite mood induction Graphical Abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=113 SRC="FIGDIR/small/711707v1_ufig1.gif" ALT="Figure 1"> View larger version (19K): org.highwire.dtl.DTLVardef@aeaacdorg.highwire.dtl.DTLVardef@14f9bf5org.highwire.dtl.DTLVardef@18805fcorg.highwire.dtl.DTLVardef@1411256_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Multistage Machine Learning Reveals Circadian Gene Programs and Supports a Retina-Choroid Axis in Myopia Development

Watcharapalakorn, A.; Poyomtip, T.; Tawonkasiwattanakun, P.; Dewi, P. K. K.; Thomrongsuwannakij, T.; Mahawan, T.

2026-04-06 bioinformatics 10.64898/2026.04.02.716020 medRxiv
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PurposeTo determine whether circadian timing defines critical molecular windows in myopia development and to assess the transferability of circadian gene programs across ocular tissues, disease stages, and species. MethodsPublicly available retinal and choroidal RNA-seq datasets from chick models of form-deprivation myopia were analyzed using unsupervised transcriptomic profiling and multistage machine-learning classification. Circadian windows were defined based on Zeitgeber time, and samples were grouped accordingly for downstream analyses. Classification model robustness was evaluated through cross-tissue and cross-stage validation and further assessed using external validation in an independent dataset. Functional translation to humans was examined using ortholog-based Gene Ontology enrichment analysis to identify conserved biological processes and higher-order regulatory pathways. ResultsA circadian critical window at ZT8-ZT12 exhibited the strongest transcriptional divergence during both myopia onset and progression. Gene signatures derived from this window generalized across retina and choroid and remained predictive across disease stages, supporting coordinated molecular regulation between ocular tissues. External validation confirmed the reproducibility of these signatures despite differences in experimental design and gene coverage. Functional mapping revealed that conserved molecular components in chicks are reorganized into more complex neuroendocrine and regulatory networks in humans, indicating cross-species conservation with increased functional complexity. ConclusionsCircadian timing strongly shapes myopia-related gene expression and underlies coordinated retina-choroid signaling. These findings highlight circadian biology as a key factor of refractive development and suggest that time-dependent mechanisms may influence myopia susceptibility, progression, and response to treatment.

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Spontaneous emergence of topographic organization in a multistream convolutional neural network

Tamura, H.

2026-02-25 neuroscience 10.64898/2026.02.23.707577 medRxiv
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Neurons in the cerebral cortex are organized topographically. In the primate visual cortex, neighboring neurons often respond to similar stimulus parameters, such as receptive field position, orientation, color, and spatial frequency. Preferred stimulus parameters change smoothly across the cortical surface. If such topographic organization plays an important role in computation, it is likely to emerge in artificial neural networks. In this study, a multistream convolutional neural network was constructed in which filters in the first convolutional layer were arranged in a two-dimensional filter matrix according to their output connections. The network was trained using supervised learning for image classification. Although adjacent filters in the filter matrix can develop any structure in principle, they acquire similar degrees of orientation and color selectivity. Moreover, they prefer similar orientations, hues, and spatial frequency. The similarity decreases with distance between filters in the matrix. Furthermore, neural-network model instances that have a strong relationship between filter distance and filter-property similarity performed better than those with a weak relationship. These results suggest that topographic organization emerges spontaneously in an artificial neural network and plays an important role in model performance, suggesting the importance of topographic organization for computations performed by artificial and biological neural networks.

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Visual confidence accurately tracks increasing internal noise with eccentricity in peripheral vision

Li, L.; Landy, M. S.

2026-02-01 neuroscience 10.64898/2026.01.28.702447 medRxiv
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Sensory representations are inherently noisy, and monitoring this noise is essential for effective decision-making. This metacognitive ability of evaluating the quality of ones perceptual decision is referred to as perceptual confidence. However, whether perceptual confidence accurately tracks internal noise remains unresolved. Peripheral vision provides a natural testing ground for this question, yet previous studies report mixed results complicated by different definitions and measurements of confidence. Here, we used a normative Bayesian framework with incentivized confidence measurements to address these discrepancies. We tested the Bayesian-confidence hypothesis that confidence is derived from the posterior probability distribution of the feature being judged, given noisy sensory measurements. We tested two perceptual tasks while varying stimulus eccentricity: spatial localization and orientation estimation. We measured confidence by post-decision wagering, by which participants set a symmetrical range around the perceptual estimates. Participants earned higher reward for narrower confidence ranges but received zero reward if the range did not enclose the target. We estimated sensory noise from the perceptual responses to predict confidence, assuming that sensory noise linearly increases with eccentricity. We then compared a normative Bayesian model with three alternative models that challenged different assumptions. Across both tasks, the Bayesian ideal-observer model best predicted confidence. These results suggest that humans can accurately monitor the increased internal noise in peripheral vision and use this information to make optimal confidence judgments.